Proteomics Specialist

The  Proteomics Platform  at the Friedrich Miescher Institute for Biomedical Research (FMI) provides comprehensive proteomics analysis support for FMI research groups. Our services include consulting, sample preparation, LC-MS measurements, data analysis and assistance with publication.

We are seeking a skilled and proactive Proteomics Specialist to join our team. The ideal candidate will be passionate about applying cutting-edge proteomics technologies in multi-disciplinary research projects.

In this role, you will:

• Collaborate on proteomics projects from conception to publication.
• Apply and develop state-of-the-art proteomics technologies.
• Operate and maintain advanced LC-MS instrumentation.
• Analyze proteomics mass spectrometry data using the latest software.
• Participate in internal progress meetings as well as external conferences and trainings.

About you

• You hold a PhD degree (or equivalent level of experience) in molecular biology, biochemistry, chemistry or a related field.
• You have hands-on experience in nano LC-MS and proteomics sample preparation.
• You have a proven track record of practical laboratory work and the development of Standard Operating Procedures (SOPs).
• You have expertise in designing complex quantitative proteomics experiments, including workflows with affinity-enrichment, PTMs, low sample amounts and data analysis.
• Experience with single-cell proteomics, workflow automation, Bruker timsTOF or Thermo Astral mass spectrometers is an advantage.
• You are proficient in analyzing proteomics data with tools such as Spectronaut, DIA-NN, FragPipe, MaxQuant, Proteome Discoverer or einprot.
• You have experience working with omics data analysis in R.
• You are a strong team player and are keen to support researchers at all levels.

What we offer

• A competitive compensation and benefits package.
• A 3-year initial contract with the possibility of transitioning to a permanent position.
• A dynamic, international and multidisciplinary environment that strives to be inclusive to people from diverse backgrounds.
• A friendly, supportive and competent team.
• Access to a thriving mass spectrometry proteomics community in Basel and Switzerland, offering opportunities for knowledge exchange and collaboration.

Please submit your application online at  www.fmi.ch/opening  by November 30, 2024. The position will remain open until filled, with applications reviewed on a rolling basis. Your application should include:

• A letter of motivation
• Your CV, including a list of publications
• Names and contact details of 2-3 referees

For more information, please contact Dr. Jan Seebacher at Write an email.

About the FMI

The FMI is a world-class biomedical research institute affiliated with the University of Basel and the Novartis Biomedical Research. With an international staff of about 330 people, including more than 170 postdoctoral fellows and graduate students, the FMI is focused on fundamental research in the fields of genome regulation, multicellular systems and neurobiology. The institute is located in the vibrant city of Basel, the third largest city in Switzerland and the leading European hub for the life sciences, conveniently situated at the borders with France and Germany.